PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0256s00230.1
Common NameLR48_Vigan10g170000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 157aa    MW: 17107.7 Da    PI: 4.4463
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0256s00230.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.22e-133411556
               AP2 15 WvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                      ++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g+
  Vang0256s00230.1  3 YAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRGP 41
                      89*****965...5*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.921148IPR001471AP2/ERF domain
SMARTSM003801.5E-19254IPR001471AP2/ERF domain
PfamPF008471.4E-6340IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-22347IPR001471AP2/ERF domain
CDDcd000183.89E-23347No hitNo description
SuperFamilySSF541713.4E-15348IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MGYAAEIRDP STKERHWLGT FDTAEEAALA YDRAARSMRG PRARTNFVYP DTPPGSSVTT  60
ILSPDEHTQT QIQIHQVQED LSSLLNPNLF SQPDPNPQFS LGGLTDTGSS YPFSGFESGD  120
YVVHSPLFSA MPPVSDNVAM GHEGFDLGSS SYFFRN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-169AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014510399.13e-56PREDICTED: ethylene-responsive transcription factor LEP-like
SwissprotQ9M6442e-36LEP_ARATH; Ethylene-responsive transcription factor LEP
TrEMBLA0A151T0195e-68A0A151T019_CAJCA; Ethylene-responsive transcription factor LEP
TrEMBLA0A0S3T9519e-68A0A0S3T951_PHAAN; Uncharacterized protein
TrEMBLA0A0L9VLG19e-68A0A0L9VLG1_PHAAN; Uncharacterized protein
STRINGGLYMA02G07460.19e-56(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39043161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.16e-25ERF family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]